The Allen Institute for Brain Science has generated multiple reference atlases, to use with our online datasets or as stand-alone resources. Refer to our Citation Policy for information on how you may use these images in your work.
The Allen Brain Explorer (beta) is an application that allows users to browse multimodal datasets in an annotated 3D spatial framework. It is created from a 3D volumetric reference atlas, annotated symmetrically using image data averaged from 1,675 adult mouse brain specimens.
The 2D coronal reference atlas is created from a 3D volumetric reference atlas, annotated symmetrically using an average of data merged from 1,675 brain specimens. It provides spatial context and a common coordinate framework for mapping data in the Allen Mouse Connectivity Atlas, the Allen Cell Types Database (mouse), and the Allen Brain Observatory.
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The 2D coronal reference atlas is annotated on Nissl sections collected from a single adult male C57Bl6 mouse, postnatal day 56. It provides the spatial context for in situ hybridization-based gene expression in the Allen Mouse Brain Atlas.
132 coronal sections at 100 µm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from a single adult male C57Bl6 mouse, postnatal day 56. It provides the spatial context for in situ hybridization-based gene expression in the Allen Mouse Brain Atlas.
21 sagittal sections at 200 µm intervalsThe 2D coronal reference atlas is annotated on Nissl sections from a 34-year-old female based on a modified Brodmann nomenclature. It provides spatial context for gene expression in the Allen Human Brain Atlas and the BrainSpan Atlas of the Developing Human Brain.
106 coronal sections at 0.4 - 3.4 mm intervalsSSR加速器怎么用？安全使用SSR加速器的一些注意事项 ...:2021-12-21 · SSR加速器使用注意事项之SSR加速器客户端篇 国内各大科技厂商，窥探隐私的欲望比较强烈，有鉴于此： 1.无论是电脑还是手机科学上网，建议不要安装国产杀毒软件。
106 coronal sections at 0.4 - 3.4 mm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from a single adult male C57Bl6 mouse, postnatal day 56 (P56). It provides the spatial context for in situ hybridization-based gene expression in the Allen Developing Mouse Brain Atlas.
21 sagittal sections at 200 µm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from a single adult male C57Bl6 mouse, postnatal day 14 (P14). It provides the spatial context for in situ hybridization-based gene expression in the Allen Developing Mouse Brain Atlas.
39 sagittal sections at 125 µm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from a single adult male C57Bl6 mouse, postnatal day 4 (P4). It provides the spatial context for in situ hybridization-based gene expression in the Allen Developing Mouse Brain Atlas.
23 sagittal sections at 160 µm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from a single adult male C57Bl6 mouse, embryonic day 18.5 (E18.5) or Theiler stage 26 (TS26). It provides the spatial context for in situ hybridization-based gene expression in the Allen Developing Mouse Brain Atlas.
19 sagittal sections at 120 µm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from a single adult male C57Bl6 mouse, embryonic day 15.5 (E15.5) or Theiler stage 24 (TS24). It provides the spatial context for in situ hybridization-based gene expression in the Allen Developing Mouse Brain Atlas.
16 sagittal sections at 120 µm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from a single adult male C57Bl6 mouse, embryonic day 13.5 (E13.5) or Theiler stage 21 (TS21). It provides the spatial context for in situ hybridization-based gene expression in the Allen Developing Mouse Brain Atlas.
15 sagittal sections at 100 µm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from a single adult male C57Bl6 mouse, embryonic day 11.5 (E11.5) or Theiler stage 19 (TS19). It provides the spatial context for in situ hybridization-based gene expression in the Allen Developing Mouse Brain Atlas.
28 sagittal sections at 40 µm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from an embryo at 15 weeks post-conception (15 pcw). It provides the spatial context for gene expression in the BrainSpan Atlas of the Developing Human Brain.
46 coronal sections at 0.5 to 1.0 mm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from an embryo at 21 weeks post-conception (21 pcw). It provides the spatial context for gene expression in the BrainSpan Atlas of the Developing Human Brain.
81 coronal sections from the cerebrum at 0.5 to 1.2 mm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from an embryo at 21 weeks post-conception (21 pcw). It provides the spatial context for gene expression in the BrainSpan Atlas of the Developing Human Brain.
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34 transverse sections at 2 mm intervalsThe 2D sagittal reference atlas is annotated on Nissl sections collected from an adult male C57Bl6 mouse, postnatal day 56 (P56). It provides the spatial context for in situ hybridization-based gene expression in Allen Mouse Spinal Cord Atlas.
34 transverse sections at 2 mm intervals